Relevant publications

The following list of selected publications provides an idea of the workshop's general framework, as well as the instructors' background. 

• Creedy, T. J., Norman, H., Tang, C. Q., Chin, K. Q., Andujar, C., Arribas, P., … Vogler, A. P. (2020). A validated workflow for rapid taxonomic assignment and monitoring of a national fauna of bees (Apiformes) using high throughput barcoding. Molecular Ecology Resources, 20(1), 40-53. https://doi.org/10.1111/1755-0998.13056

• Arribas, P., Andujar, C., Salces-Castellano, A., Emerson B. C., Vogler, A. P. (2020). The limited spatial scale of dispersal in soil arthropods revealed with whole‐community haplotype‐level metabarcoding. Molecular Ecology https://doi.org/10.1111/mec.15591

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• Andujar, C., Creedy, T. J., Arribas, P., Lopez, H., Salces-Castellano, A., Perez-Delgado, A., Vogler, A. P., Emerson B. C. (2020). Validated removal of nuclear pseudogenes and sequencing artefacts from mitochondrial metabarcode data. BioRxiv: https://doi.org/10.1101/2020.06.17.157347

 

• Creedy, T. J., Ng, W. S., & Vogler, A. P. (2019). Toward accurate species‐level metabarcoding of arthropod communities from the tropical forest canopy. Ecology and Evolution, 9(6), 3105–3116. https://doi.org/10.1002/ece3.4839

 

•  Alberdi, A., Aizpurua, O., Gilbert, M. T. P., & Bohmann, K. (2018). Scrutinizing key steps for reliable metabarcoding of environmental samples. Methods in Ecology and Evolution, 9(1), 134–147. https://doi.org/10.1111/2041-210X.12849

  

• Valentini, A., Taberlet, P., Miaud, C., Civade, R., Herder, J., Thomsen, P. F., … Dejean, T. (2016). Next-generation monitoring of aquatic biodiversity using environmental DNA metabarcoding. Molecular Ecology, 25(4), 929–942. https://doi.org/10.1111/mec.13428

 

• Joly, S., Davies, T. J., Archambault, A., Bruneau, A., Derry, A., Kembel, S. W., … Wheeler, T. A. (2014). Ecology in the age of DNA barcoding: the resource, the promise and the challenges ahead. Molecular Ecology Resources, 14(2), 221–232. https://doi.org/10.1111/1755-0998.12173

 

• Ji, Y., Ashton, L., Pedley, S. M., Edwards, D. P., Tang, Y., Nakamura, A., … Yu, D. W. (2013). Reliable, verifiable and efficient monitoring of biodiversity via metabarcoding. Ecology Letters, 16(10), 1245–1257. https://doi.org/10.1111/ele.12162

 

• Yu, D. W., Ji, Y., Emerson, B. C., Wang, X., Ye, C., Yang, C., & Ding, Z. (2012). Biodiversity soup: metabarcoding of arthropods for rapid biodiversity assessment and biomonitoring. Methods in Ecology and Evolution, 3(4), 613–623. https://doi.org/10.1111/j.2041-210X.2012.00198.x

 

• Pompanon, F., Deagle, B. E., Symondson, W. O. C., Brown, D. S., Jarman, S. N., & Taberlet, P. (2012). Who is eating what: diet assessment using next generation sequencing. Molecular Ecology, 21(8), 1931–1950. https://doi.org/10.1111/j.1365-294X.2011.05403.x

 
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